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Table 3 The eQTLs for target genes of PAL, CHS , IFS and F3H

From: Expression quantitative trait loci infer the regulation of isoflavone accumulation in soybean (Glycine max L. Merr.) seed

Traits eQTLa Gm(LG) Marker Marker interval Positionb Environment LOD score R2(%)c
PAL dqPALB2_1 14(B2) Satt560 Satt560 ~ Satt556 0.01 2011Harbin 3.39 8.11
dqPALD2_1 17(D2) Sat_209 Sat_209 ~ Sat_022 15.90 2011Harbin 4.24 6.67
CHS qCHSA1_1 05(A1) Satt 236 Satt 236-D26A 0.01 2011Harbin 5.48 4.21
qCHSDla_1 01(Dla) Satt436 Satt436-Sat_345 0.01 2011Harbin 8.64 2.71
qCHSDlb_1 02(Dlb) Satt546 Satt546-Satt459 214.80 2011Harbin 2.55 2.13
qCHSDlb_2 02(Dlb) Satt546 Satt546-Satt459 211.22 2011Harbin 2.18 3.90
dqCHSD2_1 17(D2) Satt528 Satt528-Satt256 10.74 2011Harbin 2.73 2.07
qCHSF_1 13(F) Sat_234 Sat_234-Satt149 46.17 2011Harbin 2.72 3.57
qCHSL_1 19(L) Satt278 Satt278-Sat_134 14.00 2011Harbin 2.40 15.65
qCHSL_2 19(L) Sat_134 Sat_134-Sct_010 24.51 2011Harbin 2.09 9.98
IFS dqIFSA2_1 08(A2) Sat_129 Sat_129-Sat_181 55.45 2011Harbin 7.46 17.67
dqIFSC1_1 04(C1) Sat_042 Sat_042-Satt524 6.67 2011Harbin 5.63 22.8
dqIFSD2_1 17(D2) Satt186 Satt186-Satt226 54.88 2011Harbin 8.87 16.67
qIFSF_1 13(F) Satt569 Satt569-Satt423 6.97 2011Harbin 3.09 15.84
qIFSF_2 13(F) Sat_234 Sat_234-Satt149 56.01 2011Harbin 10.92 17.89
dqIFSH_1 12(H) Satt302 Satt302-Satt279 0.01 2011Harbin 3.23 7.27
dqIFSL_1 19(L) Sat_134 Sat_134-Satt278 20.99 2011Harbin 7.26 16.12
dqIFSL_2 19(L) Sct_010 Sct_010-Sat_134 43.95 2011Harbin 9.75 17.97
qIFSN_1 03(N) Satt152 Satt152-Satt530 6.67 2011Harbin 2.50 27.42
qIFSN_2 03(N) Satt530 Satt530-Satt152 29.53 2011Harbin 2.50 12.80
dqIFSO_1 10(O) Satt345 Satt345-Satt592 6.00 2011Harbin 9.43 19.43
dqIFSO_2 10(O) Sat_341 Sat_341-Satt585 88.39 2011Harbin 9.78 15.69
F3H dqF3HC2_1 06(C2) Satt322 Satt322-Satt658 57.64 2011Harbin 2.27 2.37
qF3HDlb_1 02(Dlb) Satt157 Satt157-Satt271 25.71 2011Harbin 3.62 10.01
dqF3HDlb_2 02(Dlb) Sat_135 Sat_135-Sat_096 30.28 2011Harbin 7.53 14.32
qF3HDlb_3 02(Dlb) Sat_069 Sat_069-Sat_279 168.62 2011Harbin 2.41 8.49
dqF3HDlb_4 02(Dlb) Satt459 Satt459-Sat_069 185.58 2011Harbin 2.18 5.54
dqF3HD2_1 17(D2) Satt031 Satt031-Sat_326 0.01 2011Harbin 2.67 1.05
dqF3HE_1 15(E) Sat_112 Sat_112-Sat_380 22.09 2011Harbin 2.10 4.85
dqF3HF_1 13(F) Sat_262 Sat_262-Sat_103 101.22 2011Harbin 2.63 2.24
dqF3HK_1 09(K) Satt349 Satt349-Satt518 141.56 2011Harbin 2.08 1.57
dqF3HN_1 03(N) Sat_084 Sat_084-Sat_304 41.45 2011Harbin 4.70 6.10
  dqF3HO_1 10(O) Satt592 Satt592-Satt633 27.54 2011Harbin 2.62 2.32
  1. aeQTL: The nomenclature of the eQTL included four parts: QTL, trait, linkage group name and QTL order in the linkage group, respectively.
  2. bPosition from the left marker of the interval on each linkage group.
  3. cProportion of phenotypic variance (R2) explained by a eQTL.
  4. dTrans-eQTL, others are cis-eQTL.
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