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Table 2 Selected gene target predictions for novel P. alecto miRNA pal-can-276 (miR-541)

From: Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing

Pteropus alecto gene Gene ID Gene name Minimum free energy (Best hit) 3’ UTR length Hit positions
PAL_GLEAN_10012524 USP20 ubiquitin specific peptidase 20 −28.73 1592 1189
PAL_GLEAN_10020514 DDIT4 DNA-damage-inducible transcript 4 −28.62 881 725
PAL_GLEAN_10016798 CXXC5 CXXC finger 5 −25.01 578 246,390
PAL_GLEAN_10009170 USP19 ubiquitin specific peptidase 19 −23.6 570 153
PAL_GLEAN_10002258 POLM polymerase (DNA directed), mu −23.07 2124 127
PAL_GLEAN_10012978 TNFRSF1B tumor necrosis factor receptor superfamily, member 1B −22.97 1595 155
PAL_GLEAN_10025525 LRRC32 leucine rich repeat containing 32 −21.93 2398 2193
PAL_GLEAN_10012819 LRRFIP2 leucine rich repeat (in FLII) interacting protein 2 −21.91 1906 1405
PAL_GLEAN_10006697 CRLF1 cytokine receptor-like factor 1 −21.56 754 651
PAL_GLEAN_10015148 IL28RA interleukin 28 receptor, alpha (interferon, lambda receptor) −21.08 1404 1334
PAL_GLEAN_10014403 ATG9A ATG9 autophagy related 9 homolog A (S. cerevisiae) −20.74 1437 443
PAL_GLEAN_10020540 AIFM2 apoptosis-inducing factor, mitochondrion-associated, 2 −20.45 2358 832
PAL_GLEAN_10010342 ZFAT zinc finger and AT hook domain containing −20.09 679 164