Table 2 Selected gene target predictions for novel P. alecto miRNA pal-can-276 (miR-541)
From: Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
Pteropus alecto gene | Gene ID | Gene name | Minimum free energy (Best hit) | 3’ UTR length | Hit positions |
|---|---|---|---|---|---|
PAL_GLEAN_10012524 | USP20 | ubiquitin specific peptidase 20 | −28.73 | 1592 | 1189 |
PAL_GLEAN_10020514 | DDIT4 | DNA-damage-inducible transcript 4 | −28.62 | 881 | 725 |
PAL_GLEAN_10016798 | CXXC5 | CXXC finger 5 | −25.01 | 578 | 246,390 |
PAL_GLEAN_10009170 | USP19 | ubiquitin specific peptidase 19 | −23.6 | 570 | 153 |
PAL_GLEAN_10002258 | POLM | polymerase (DNA directed), mu | −23.07 | 2124 | 127 |
PAL_GLEAN_10012978 | TNFRSF1B | tumor necrosis factor receptor superfamily, member 1B | −22.97 | 1595 | 155 |
PAL_GLEAN_10025525 | LRRC32 | leucine rich repeat containing 32 | −21.93 | 2398 | 2193 |
PAL_GLEAN_10012819 | LRRFIP2 | leucine rich repeat (in FLII) interacting protein 2 | −21.91 | 1906 | 1405 |
PAL_GLEAN_10006697 | CRLF1 | cytokine receptor-like factor 1 | −21.56 | 754 | 651 |
PAL_GLEAN_10015148 | IL28RA | interleukin 28 receptor, alpha (interferon, lambda receptor) | −21.08 | 1404 | 1334 |
PAL_GLEAN_10014403 | ATG9A | ATG9 autophagy related 9 homolog A (S. cerevisiae) | −20.74 | 1437 | 443 |
PAL_GLEAN_10020540 | AIFM2 | apoptosis-inducing factor, mitochondrion-associated, 2 | −20.45 | 2358 | 832 |
PAL_GLEAN_10010342 | ZFAT | zinc finger and AT hook domain containing | −20.09 | 679 | 164 |