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Table 3 Summary of relationship between CNVs and SNPs

From: Genome wide CNV analysis reveals additional variants associated with milk production traits in Holsteins

  MY FY PY FP PP All
  Count % Count % Count % Count % Count % Count %
NN 2 11.76% 2 10.53% 2 12.50% 2 28.57% 8 34.78% 16 19.51%
LD NS 2 11.76% 1 5.26% 1 6.25% 0 0.00% 0 0.00% 4 4.88%
Not tagged 4 23.53% 3 15.79% 3 18.75% 2 28.57% 8 34.78% 20 24.39%
LD 0 0.00% 1 5.26% 2 12.50% 0 0.00% 0 0.00% 3 3.66%
LD* 0 0.00% 0 0.00% 0 0.00% 1 14.29% 1 4.35% 2 2.44%
IN 4 23.53% 4 21.05% 3 18.75% 0 0.00% 6 26.09% 17 20.73%
IN* 6 35.29% 5 26.32% 5 31.25% 4 57.14% 6 26.09% 26 31.71%
IN** 3 17.65% 6 31.58% 3 18.75% 0 0.00% 2 8.70% 14 17.07%
Tagged 13 76.47% 16 84.21% 13 81.25% 5 71.43% 15 65.22% 62 75.61%
Total 17   19   16   7   23   82  
  1. For the meanings of IN*, IN**, LD*, please refer to the main text.