Figure 2
From: Primary transcriptome map of the hyperthermophilic archaeon Thermococcus kodakarensis
Consensus promoter motifs. Each frame shows the best ranking sequence motif identified by a MEME search [45] performed on a window from -50Â bp upstream to the TSS for (A) pTSS of annotated ORFs, (B) sTSS of annotated ORFs, (C) iTSS and (D) aTSS. An orphan transcript was so designated when there was no detectable association of a TSS with an annotated gene, and (E) shows the consensus promoter motifs for orphan transcripts. The negative numbers on the x-axis indicate the distance in bp upstream from the identified TSS.