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Table 1 Characteristics of the sRNAs identified in orange leaf, flower and fruit

From: Genome-wide comparison of microRNAs and their targeted transcripts among leaf, flower and fruit of sweet orange

  

Total sRNAs

Unique sRNAs

Leaf

Raw reads

18961890

 
 

Clean readsa

10174438 (100%)

586073 (100%)

 

Match genome

6234563 (61.28%)

358731 (61.21%)

 

Match miRbaseb

1068582 (10.50%)

2699 (0.46%)

Flower

Raw reads

17841995

 
 

Clean readsa

9252302 (100%)

612511 (100%)

 

Match genome

5172633 (55.91%)

358709 (58.56%)

 

Match miRbaseb

559470 (6.05%)

1985 (0.32%)

Fruit

Raw readsc

4598696

 
 

Clean readsa

1785395 (100%)

202965 (100%)

 

Match genome

1415319 (79.27%)

154864 (76.30%)

 

Match miRbaseb

55653 (3.12%)

771 (0.38%)

  1. a Low quality sequences containing ambiguous nucleotides, sequences shorter than 18 nt, and sequence counts lower than three were removed.
  2. b Small RNAs matching miRbase (v16) with a maximum of two mismatches (if gap exist, number of gaps plus mismatches ≤ 5).
  3. c The raw reads of fruit sRNA library were from our previous research (Xu et al. [35]).
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BMC Genomics

ISSN: 1471-2164

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