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Table 1 Characteristics of the sRNAs identified in orange leaf, flower and fruit

From: Genome-wide comparison of microRNAs and their targeted transcripts among leaf, flower and fruit of sweet orange

   Total sRNAs Unique sRNAs
Leaf Raw reads 18961890  
  Clean readsa 10174438 (100%) 586073 (100%)
  Match genome 6234563 (61.28%) 358731 (61.21%)
  Match miRbaseb 1068582 (10.50%) 2699 (0.46%)
Flower Raw reads 17841995  
  Clean readsa 9252302 (100%) 612511 (100%)
  Match genome 5172633 (55.91%) 358709 (58.56%)
  Match miRbaseb 559470 (6.05%) 1985 (0.32%)
Fruit Raw readsc 4598696  
  Clean readsa 1785395 (100%) 202965 (100%)
  Match genome 1415319 (79.27%) 154864 (76.30%)
  Match miRbaseb 55653 (3.12%) 771 (0.38%)
  1. a Low quality sequences containing ambiguous nucleotides, sequences shorter than 18 nt, and sequence counts lower than three were removed.
  2. b Small RNAs matching miRbase (v16) with a maximum of two mismatches (if gap exist, number of gaps plus mismatches ≤ 5).
  3. c The raw reads of fruit sRNA library were from our previous research (Xu et al. [35]).