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Table 3 Target genes grouped into category I of novel miRNAs in orange

From: Genome-wide comparison of microRNAs and their targeted transcripts among leaf, flower and fruit of sweet orange

   Category  
Novel miRNA Target gene in leaves in flowers in fruit Annotation
Csi-miRN02 Cs1g08400 I N/A N/A Chaperonin CPN60-1
Csi-miRN02 Cs3g18790 I II I Alkylated DNA repair protein alkB homolog 8
Csi-miRN02 Cs8g12570 I N/A N/A LRR receptor-like serine/threonine-protein kinase EFR
Csi-miRN07 Cs8g09620 III I N/A SRF-type transcription factor family protein
Csi-miRN11 Cs8g13560 I III I No annotation
Csi-miRN20 Cs1g12230 N/A N/A I Protein FAR1-RELATED SEQUENCE 6
Csi-miRN20 Cs3g05320 I III I No annotation
Csi-miRN37 orange1.1 t02400 II I N/A Indole-3-acetic acid-induced protein ARG7
  1. N/A means not available in the degradome data. Target transcripts were divided into three classes. In category I, the miRNA-guided cleavage fragment was the most abundant tag matching the transcript; In category II, the miRNA-guided cleavage fragment was not the most abundant fragment; however, it still formed a clear peak in the T-plot. The remaining target transcripts were classified into category III.
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