Table 4 Numbers of Simple Sequence Repeats (SSRs) and their co-localization with pre-miRNAs in sweet orange
Repeat unit | Repeat type | Frequency of SSR region co-localize with pre-miRNAs |
|---|---|---|
A | Mononucleotide | 1 |
G | Mononucleotide | 1 |
T | Mononucleotide | 5 |
AC | Dinucleotide | 2 |
AG | Dinucleotide | 5 |
AT | Dinucleotide | 2 |
CT | Dinucleotide | 3 |
GA | Dinucleotide | 7 |
GT | Dinucleotide | 1 |
TA | Dinucleotide | 12 |
TC | Dinucleotide | 3 |
AAG | Trinucleotide | 1 |
ACA | Trinucleotide | 1 |
ATA | Trinucleotide | 1 |
ATT | Trinucleotide | 3 |
CAG | Trinucleotide | 1 |
CTT | Trinucleotide | 7 |
GAT | Trinucleotide | 2 |
GTG | Trinucleotide | 1 |
TAA | Trinucleotide | 5 |
TCA | Trinucleotide | 1 |
TGC | Trinucleotide | 1 |
TGG | Trinucleotide | 2 |
TTC | Trinucleotide | 5 |
CATG | Tetranucleotide | 1 |
TCAT | Tetranucleotide | 1 |
TGCA | Tetranucleotide | 1 |
TTAA | Tetranucleotide | 2 |
TTCT | Tetranucleotide | 4 |
TTTG | Tetranucleotide | 1 |
TATAAT | Hexanucleotide | 2 |