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Table 3 Homologs of A. thaliana iron homeostasis genes found to be significantly differentially expressed

From: Identification of candidate genes involved in early iron deficiency chlorosis signaling in soybean (Glycine max) roots and leaves

Soybean Gene ID Arabidopsis Gene ID Gene function Fold change E-value
One Hour Leaf     
Glyma09g41470 AT2G28160 FIT1, BHLH029 -3.84 1.00E-06
Glyma01g02950 AT5G14040 PHT3;1 | phosphate transporter 3;1 -2.53 8.00E-14
Six Hour Leaf     
Glyma09g18770 AT3G18290 EMB2454, BTS | zinc finger protein-related 3.28 0.0E + 00
Glyma07g10400 AT3G18290a EMB2454, BTS | zinc finger protein-related 2.48 0.0E + 00
Glyma02g42780 AT2G28160 FIT1, BHLH029 -2.48 1.00E-07
Glyma14g05870 AT2G28160 FIT1, BHLH029 -2.77 4.00E-07
Glyma01g32130 AT2G28160 FIT1, BHLH029 -5.04 6.00E-08
Glyma16g02320 AT2G28160 FIT1, BHLH029 9.24 7.00E-13
Glyma17g12450 AT5G14040 PHT3;1 | phosphate transporter 3;1 2.20 8.00E-14
Glyma17g18010 AT2G23150a NRAMP3, ATNRAMP3 4.20 0.0E + 00
Glyma16g33840 AT1G65730 YSL7 | YELLOW STRIPE like 7 -2.56 0.0E + 00
One Hour Root     
Glyma02g14350 AT3G60330 AHA7, HA7| H(+) -ATPase 7 -2.22 4.00E-07
Glyma18g38650 AT5G62670 AHA11, HA11 | H(+)-ATPase 11 4.22 5.0E-86
Glyma05g00420 AT5G49730 ATFRO6, FRO6 | ferric reduction oxidase 2.78 9.00E-23
Glyma08g18710 AT5G56080a ATNAS2, NAS2 | nicotianamine synthase 2 2.78 1.0E-89
Glyma03g28630 AT3G56970a BHLH038, ORG2 | basic helix-loop-helix 2.46 5.0E-52
Glyma01g15930 AT2G28160 FIT1, BHLH029 3.68 5.00E-09
Glyma16g03770 AT1G01580a FRO2, FRD1, ATFRO2 | ferric reduction oxidase 2.78 0.0E + 00
Glyma11g08830 AT2G01770 VIT1, ATVIT1 | vacuolar iron transporter 3.96 2.00E-10
Six Hour Root     
Glyma19g41630 AT5G56080a ATNAS2, NAS2 | nicotianamine synthase 2 2.64 3.0E-136
Glyma01g02251 AT2G28160 FIT1, BHLH029 2.24 1.00E-15
Glyma06g05460 AT4G19690 IRT1 | iron-regulated transporter 1 2.99 2.00E-47
Glyma04g05410 AT4G19690 IRT1 | iron-regulated transporter 1 2.83 6.00E-63
Glyma08g17530 AT4G19690a IRT1 | iron-regulated transporter 1 2.72 7.00E-99
Glyma13g10791 AT4G19690 IRT1 | iron-regulated transporter 1 5.55 4.00E-102
Glyma15g41620 AT4G19690 IRT1 | iron-regulated transporter 1 2.93 9.00E-99
Glyma20g06210 AT4G19690a IRT1 | iron-regulated transporter 1 4.10 2.00E-101
Glyma08g08090 AT2G01770 VIT1, ATVIT1 | vacuolar iron transporter -4.33 7.00E-11
Glyma05g24980 AT2G01770 VIT1, ATVIT1 | vacuolar iron transporter -3.16 3.00E-09
  1. Sequences of A. thaliana proteins identified as involved in iron homeostasis in Arabidopsis by Kobayashi and Nishizawa [51] were downloaded from The Arabidopsis Information Resource (TAIR). BLASTP (E < 10-6) was used to compare the protein sequence of DEGs identified in this study against the known A. thaliana iron homeostasis gene protein sequences. Homologous iron homeostasis genes are shown in table, divided by time and tissue. A positive fold change indicates induction in response to iron deficiency while a negative fold change indicates repression due to iron stress. aOrthology between Arabidopsis and soybean proteins were verified by reciprocal best BLASTP.