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Table 2 Statistics of the Sf_TR2012b transcriptome assembly compared to D. melanogaster and B. mori

From: Establishment and analysis of a reference transcriptome for Spodoptera frugiperda

 

Sf_GATC_Clusters

Sf_TR2012b

Dm_transcripts_r5.50

Bm_assembled_ESTs

Sequence numbers

183,373

54,976

28,538

16,425

Total length (nt)

61,002,208

36,925,829

81,145,340

11,205,779

N50 (nt)

408

876

3,856

676

N90 (nt)

295

400

1,447

475

  1. The data for D. melanogaster has been downloaded from Flybase (ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r5.50_FB2013_02/fasta/dmel-all-transcript-r5.50.fasta.gz) while the data from B. mori has been downloaded from SilkDB (ftp://ftp.genomics.org.cn/pub/SilkDB/cDNA/Silkworm_unigenes/SW_unigene.seq). In D. melanogaster, all transcripts correspond to the latest version of transcript annotation coming from gene prediction and manual curation. B. mori dataset has been generated by assembling a collection of ~64,000 ESTs, giving two reference points for different transcriptomic strategies.
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BMC Genomics

ISSN: 1471-2164

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