Table 5 Recombination hotspots and cold spot and their genomic composition
Chr. | Flanking markers | Interval in cM | Interval in bp | Recombination rate (cM/Mb) | G + C content (%) | Number of genes | Gene density per Mb |
|---|---|---|---|---|---|---|---|
Recombination Hot spots | |||||||
Ca1 | scaffold101p2764466-scaffold101p2786728 | 13.1-14.3 | 22262 | 53.9 | 30.2 | 2 | 89.8 |
Ca2 | CAV1SC817.1P81915-scaffold183p1539190 | 51.9-53.7 | 84368 | 21.3 | 27.5 | 8 | 94.8 |
Ca4 | CAV1SC25.1P1095606-scaffold1758p2675534 | 10.2-10.8 | 27999 | 21.4 | 31.5 | 6 | 214.3 |
Ca4 | scaffold1534p1404651-scaffold1534p1421244 | 73.4-73.9 | 16593 | 30.1 | 29.7 | 2 | 120.5 |
Ca4 | CAV1SC69.1P28720 -CAV1SC69.1P3429 | 74.5-75.1 | 25188 | 23.8 | 26.8 | 2 | 79.4 |
Ca8 | CAV1SC20.1P605299-scaffold928p122183 | 36.6-37.9 | 55103 | 23.6 | 27.6 | 6 | 108.9 |
Recombination Cold spot | |||||||
Ca6 | scaffold1441p53604-scaffold213p601853 | 75.1-75.1 | 22,875,656 | 0 | 22.1 | 906 | 39.6 |