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Table 2 Significantly represented miRNAs in 2102Ep and NTera-2 data with their associated targets

From: An integrated analysis of the SOX2 microRNA response program in human pluripotent and nullipotent stem cell lines

Cell line miRNA Fold change Targets
2102Ep miR-148a -3.63 ARRDC3[58], ATP2B4, CHD7, ELMO1, FAM123B, H2AFY, HDGF, HMGA2, IL6ST, ITGA5[59], ITGB8[59], LIX1, NRP1, PREX1, TEAD1, TMEM54
mir-26a -1.73 ADAM19, AMOT, CDH2, CDH11, CSNK1G1, ENC1, ENPEP, HAS2, HMGA2[60], HOXA5[61], HOXA9, LHX1, ITGA5, ITGB8, LEF1[62], LIFR, MAP2[63], NID1, NRIP1, PLXNA2, PRTG, SSFA2, TFAP2A, USP3, WNT5A, ZSWIM6
miR-200b -1.48 AHNAK, ARRDC3, CDH11, CNKSR3, CNTFR, EFNA1[64], EMP1, FN1[65], GATA2[66], GLI3, HEG1, HOXA5, KIAA0101, MAP2, MBNL3, NKD1, NRIP1, NRP2, NTF3, PLXNA2, PRTG, ST6GALNAC5, TEAD1, TFAP2A[67], WWC3, ZEB2[68]
miR-30c -1.23 ACTC1, ADAM19, ADAMTS9, AHNAK, CAMK2N1, CHD7, CSNK1G1, CYP24A1, ELMO1, FAM123B, GRHL2, ITGA5, KIAA1024, LHX1, LIFR, MBNL3, NID1, NRIP1, NRP2, PLXNA2, PRTG, RARG, RASGRP3, RHOB, SNAI1[69], SNAI2, TBL1X, TEAD1, TIMP3, ZEB2, ZSWIM6
miR-28 1.71 DPF1 , IQSEC2, PRUNE2
miR-517b -1.94 CACNG4, HOXA5, NKD1, PRTG, ZEB2, ZNF436
miR-518a-3p -2.47 FRAS1, IL13RA1, TEAD1, TGFBR3
miR-518b -2.06
miR-518c -3.33
miR-518f -1.87
NTera-2 miR-200c -1.80 AHNAK, CITED2, MBNL3, NTF3[70], PLXNA2, PRTG, SEMA6D[71], YPEL2
miR-367 -1.46 ATP2B4, CADM2, EOMES, HAND1, MBNL3, PKDCC, SEMA6D, SESN3
  1. Genes in bold are previously confirmed targets of their respective miRNAs which also showed up in our data. Genes in cursive style are predicted by TargetScan and either microT-CDS or miRanda (August 2010 Release). All other genes were predicted by all three prediction tools.