Figure 3

Hive plots of sequence similarity among V1R I repertoires. Distinct V1RI loci are displayed as nodes phylogenetically arranged along three axes. Blue, purple, and yellow arcs identify loci sharing 98%, 99%, and 100% nucleotide sequence variation, respectively. Red arcs identify loci recovered with PacBio CCS between 1× and 6× coverage. Panel A compares the V1RI repertoires of M. murinus 1 (CCS), M. murinus 2 (CCS), and draft genome sequences mined by Young et al. [18]. Red nodes identify loci that are unique to PacBio CCS within M. murinus 1. Panel B compares the V1RI repertoires of M. murinus 2 (CCS), M. murinus 2 [29], and draft genome sequences mined by Young et al. [18].