Skip to main content

Table 1 Summary of the exome sequencing data

From: Inferring copy number and genotype in tumour exome data

Exome platform Agilent SureSelect Human All Exon Version 4 Roche NimbleGen EZ Exome SeqCap Version 2 Roche NimbleGen EZ Exome SeqCap Version 1
No of paired samples 1 × 2 11 × 2 6 × 2
Target size 51Mbp 36Mbp 26Mbp
Sequencing platform Illumina HiSeq Illumina GAIIx Illumina GAIIx
Read length 101 bp 100 bp 79 bp, 100 bp and 101 bp
Avg. mapped reads (BWA)* 102,082,760 86,607,431 77,433,963
Avg. on target reads* 95,930,467 78,038,985 70,758,116
Avg. bases mapped to target regions* 9.7Gbp 7.8Gbp 6.8Gbp
Average coverage per targeted base 189.28 216.91 204.68
  1. *Per sample.