Table 2 Overall performance for CNA detection of each method in terms of mean / median values
From: Inferring copy number and genotype in tumour exome data
Method | ADTEx | ExomeCNV | VarScan 2 | Control-FREEC | Method [[12]] |
|---|---|---|---|---|---|
Sensitivity | 92.5% / 94.1% | 92.3% / 94.2% | 91.9% / 93.2% | 75.5% / 89.8% | 86.9% / 88.3% |
Specificity | 98.5% / 99.5% | 95.1% / 97.5% | 96.3% / 98.0% | 90.3% / 99.8% | 93.8% / 99.6% |
Precision | 91.9% / 96.8% | 68.2% / 75.8% | 76.4% / 80.2% | 78.7% / 94.6% | 84.6% / 92.9% |
Accuracy | 97.9% / 99.3% | 95.3% / 96.4% | 96.0% / 97.2% | 90.1% / 99.2% | 94.5% / 98.9% |
F-Measure | 91.5% / 92.3% | 76.5% / 90.6% | 82.0% / 84.7% | 76.0% / 82.5% | 85.2% / 87.8% |