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Table 1 Gene copy number variations likely under parallel selection

From: Parallel selection on gene copy number variations through evolution of three-spined stickleback genomes

Ensembl gene ID Genomic location Group having more copies In divergent regions [[26]] Gene annotation
  Linkage group Start End    
ENSGACG00000014268 groupI 21,543,442 21,565,537 Freshwater Yes Tensin 1 (TNS1)
ENSGACG00000014289 groupI 21,600,545 21,614,802 Freshwater Yes Serine/threonine kinase 11 interacting protein (STK11IP)
ENSGACG00000018214 groupIV 11,925,723 11,934,224 Freshwater No Kinesin family member 3A (KIF3A)
ENSGACG00000019313 groupIV 23,928,955 23,953,125 Freshwater No Tubulin tyrosine ligase-like family member 12 (TTLL12)
ENSGACG00000019321 groupIV 23,968,608 23,982,358 Freshwater Yes Sulfotransferase family 4A member 1 (SULT4A1)
ENSGACG00000020171 groupVII 12,721,951 12,727,083 Freshwater No Protein phosphatase 1 regulatory (inhibitor) subunit 14A (PPP1R14A)
ENSGACG00000014553 groupXI 15,607,308 15,613,431 Freshwater No Apolipoprotein L 2 (APOL2)
ENSGACG00000002886 groupXIX 2,446,925 2,473,806 Freshwater Yes NLR family CARD domain containing 5 (NLRC5)
ENSGACG00000002902 groupXIX 2,484,537 2,497,605 Freshwater Yes *Myosin heavy chain (MyHC)
ENSGACG00000002933 groupXIX 2,501,529 2,511,962 Freshwater Yes *Myosin heavy chain (MyHC)
ENSGACG00000006397 groupXX 6,176,973 6,190,798 Freshwater No Dopa decarboxylase (aromatic L-amino acid decarboxylase)(DDC)
ENSGACG00000002551 groupXXI 5,808,646 5,870,440 Freshwater No *Rab effector MyRIP-like (MYRIP)
ENSGACG00000002682 groupXXI 6,189,464 6,240,135 Freshwarer No Neuropilin (NRP) and tolloid (TLL)-like 1 (NETO1)
ENSGACG00000002744 groupXXI 6,534,938 6,558,550 Freshwater No Junctophilin 1 (JPH1)
ENSGACG00000002857 groupXXI 7,179,938 7,191,684 Freshwater No Carboxypeptidase A6 (CPA6)
ENSGACG00000002913 groupXXI 7,252,896 7,262,425 Freshwater No Minichromosome maintenance domain containing 2 (MCMDC2)
ENSGACG00000002918 groupXXI 7,255,256 7,257,350 Freshwater No *Unknown
ENSGACG00000003408 groupXXI 7,994,019 7,996,973 Freshwater No *Neoverrucotoxin
ENSGACG00000015099 scaffold_68 405,524 407,382 Freshwater No LSM14B SCD6 homolog B (S. cerevisiae) (LSM14B)
ENSGACG00000019508 groupIV 25,553,051 25,563,391 Marine No Neurexophilin and PC-esterase domain family member 3 (NXPE3)
ENSGACG00000020238 groupVII 14,778,775 14,788,878 Marine No *Gap-Pol polyprotein-like
ENSGACG00000003374 groupVIII 1,526,335 1,528,158 Marine No *Unknown
ENSGACG00000003379 groupVIII 1,528,722 1,530,746 Marine No *Unknown
ENSGACG00000005313 groupXI 1,204,843 1,206,464 Marine No *Heat shock protein (HSP)
  1. *Gene annotations were based on BlastX search if Ensembl annotations were unavailable.
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