Table 1 Gene copy number variations likely under parallel selection
Ensembl gene ID | Genomic location | Group having more copies | In divergent regions [[26]] | Gene annotation | ||
|---|---|---|---|---|---|---|
| Â | Linkage group | Start | End | Â | Â | Â |
ENSGACG00000014268 | groupI | 21,543,442 | 21,565,537 | Freshwater | Yes | Tensin 1 (TNS1) |
ENSGACG00000014289 | groupI | 21,600,545 | 21,614,802 | Freshwater | Yes | Serine/threonine kinase 11 interacting protein (STK11IP) |
ENSGACG00000018214 | groupIV | 11,925,723 | 11,934,224 | Freshwater | No | Kinesin family member 3A (KIF3A) |
ENSGACG00000019313 | groupIV | 23,928,955 | 23,953,125 | Freshwater | No | Tubulin tyrosine ligase-like family member 12 (TTLL12) |
ENSGACG00000019321 | groupIV | 23,968,608 | 23,982,358 | Freshwater | Yes | Sulfotransferase family 4A member 1 (SULT4A1) |
ENSGACG00000020171 | groupVII | 12,721,951 | 12,727,083 | Freshwater | No | Protein phosphatase 1 regulatory (inhibitor) subunit 14A (PPP1R14A) |
ENSGACG00000014553 | groupXI | 15,607,308 | 15,613,431 | Freshwater | No | Apolipoprotein L 2 (APOL2) |
ENSGACG00000002886 | groupXIX | 2,446,925 | 2,473,806 | Freshwater | Yes | NLR family CARD domain containing 5 (NLRC5) |
ENSGACG00000002902 | groupXIX | 2,484,537 | 2,497,605 | Freshwater | Yes | *Myosin heavy chain (MyHC) |
ENSGACG00000002933 | groupXIX | 2,501,529 | 2,511,962 | Freshwater | Yes | *Myosin heavy chain (MyHC) |
ENSGACG00000006397 | groupXX | 6,176,973 | 6,190,798 | Freshwater | No | Dopa decarboxylase (aromatic L-amino acid decarboxylase)(DDC) |
ENSGACG00000002551 | groupXXI | 5,808,646 | 5,870,440 | Freshwater | No | *Rab effector MyRIP-like (MYRIP) |
ENSGACG00000002682 | groupXXI | 6,189,464 | 6,240,135 | Freshwarer | No | Neuropilin (NRP) and tolloid (TLL)-like 1 (NETO1) |
ENSGACG00000002744 | groupXXI | 6,534,938 | 6,558,550 | Freshwater | No | Junctophilin 1 (JPH1) |
ENSGACG00000002857 | groupXXI | 7,179,938 | 7,191,684 | Freshwater | No | Carboxypeptidase A6 (CPA6) |
ENSGACG00000002913 | groupXXI | 7,252,896 | 7,262,425 | Freshwater | No | Minichromosome maintenance domain containing 2 (MCMDC2) |
ENSGACG00000002918 | groupXXI | 7,255,256 | 7,257,350 | Freshwater | No | *Unknown |
ENSGACG00000003408 | groupXXI | 7,994,019 | 7,996,973 | Freshwater | No | *Neoverrucotoxin |
ENSGACG00000015099 | scaffold_68 | 405,524 | 407,382 | Freshwater | No | LSM14B SCD6 homolog B (S. cerevisiae) (LSM14B) |
ENSGACG00000019508 | groupIV | 25,553,051 | 25,563,391 | Marine | No | Neurexophilin and PC-esterase domain family member 3 (NXPE3) |
ENSGACG00000020238 | groupVII | 14,778,775 | 14,788,878 | Marine | No | *Gap-Pol polyprotein-like |
ENSGACG00000003374 | groupVIII | 1,526,335 | 1,528,158 | Marine | No | *Unknown |
ENSGACG00000003379 | groupVIII | 1,528,722 | 1,530,746 | Marine | No | *Unknown |
ENSGACG00000005313 | groupXI | 1,204,843 | 1,206,464 | Marine | No | *Heat shock protein (HSP) |