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Table 3 List of the most significant associations detected with PLINK for serum lipid traits 1

From: A genome-wide association analysis for porcine serum lipid traits reveals the existence of age-specific genetic determinants

Trait

CHR

N

SNP

Reg(Mb)

P

q

Bonf

E

A1

MAF

LDL190

SSC3

13

ALGA0021216

124.8-138.9

1.46x10e-04

0.01

0.03

-0.04

A

0.33

SSC6

7

ALGA0036903

126.6-135.1

4.46x10e-04

0.01

0.10

0.04

A

0.35

SSC10

4

ALGA0103072

69.8-76.9

3.62x10e-04

0.01

0.08

0.04

G

0.31

CHOL190

SSC1

6

M1GA0001375

264.6-271.9

1.49x10e-04

0.0037

0.03

0.03

A

0.39

SSC3

5

ALGA0021216

124.8-138.6

2.84x10e-04

0.01

0.06

-0.03

A

0.33

SSC6

1

ALGA0110498

93.7

1.42x10e-04

0.0037

0.03

-0.04

A

0.12

7

ALGA0037119

135.0-136.2

4.86x10e-05

0.0035

0.01

0.03

A

0.36

14

ASGA0030240

145.9-153.4

9.02x10e-05

0.0034

0.02

0.03

A

0.32

SSC10

2

ALGA0103072

76.8-76.9

3.74x10e-04

0.01

0.09

0.03

G

0.31

TRIG45

SSC2

1

MARC0001645

87.1

5.97x10e-04

0.01

0.08

0.04

A

0.33

SSC7

1

MARC0058691

10.7

1.73x10e-04

0.01

0.02

0.06

G

0.20

9

H3GA0022580

95.6-99.9

5.61x10e-04

0.01

0.07

0.05

G

0.38

2

ALGA0043835

100.0-100.1

4.09x10e-04

0.01

0.05

0.05

A

0.38

SSC10

7

MARC0042485

0.9-16.1

7.04x10e-06

0.00092

0.00092

0.06

A

0.29

7

MARC0003307

38.0-39.0

1.11x10e-04

0.01

0.01

-0.05

A

0.33

SSC11

1

H3GA0031439

16.2

4.82x10e-04

0.01

0.06

-0.05

A

0.30

SSC14

33

ALGA0080030

101.1-114.0

2.05x10e-04

0.01

0.03

-0.07

A

0.14

SSC16

4

ASGA0072378

4.2-17.7

5.29x10e-04

0.01

0.07

0.06

G

0.12

TRIG190

SSC1

4

ALGA0108388

28.6-30.2

3.08x10e-04

0.0031

0.05

0.06

A

0.26

SSC6

16

ASGA0089937

120.2-136.0

1.01x10e-05

0.00097

0.0015

-0.07

A

0.35

SSC7

29

ALGA0041314

50.3-52.4

2.88x10e-04

0.0031

0.04

0.06

A

0.42

SSC10

1

SIRI0001003

68.0

8.99x10e-05

0.0027

0.01

-0.06

C

0.28

  1. 1N: Number of significant SNPs, CHR: chromosome, SNP: most significant SNP, Reg (Mb): region containing significant SNPs according to Ensembl (S.scrofa 10.2), P: nominal P-value, q: q-value with FDR ≤ 0.05, Bonf: Bonferroni-corrected P-value, A1: minority allele, MAF: frequency of the minority allele, E: allelic effect.