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Table 2 Length distribution of the transcripts and unigenes clustered from the de novo assembly

From: Comprehensive analysis of differentially expressed genes and transcriptional regulation induced by salt stress in two contrasting cotton genotypes

Category

Transcript

Unigene

All (> = 200 bp)

415,429

143,080

> = 500 bp

273,632

56,929

> = 1000 bp

181,131

30,038

N50

1,747

1,239

N90

497

277

Total length

236,414,577

53,791,217

Max length

14,995

14,995

Min length

201

201

Average length

1111.61

707.9

  1. Note: The N50 size is computed by sorting all transcripts from largest to smallest and by determining the minimum set of transcripts whose sizes total 50% of the entire transcript and unigene was the same; N90 was counted in the similar way.
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BMC Genomics

ISSN: 1471-2164

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