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Table 5 Summary of the numbers of differentially co-expressed unigenes from the cluster 1 and cluster 2 by STEM analysis

From: Comprehensive analysis of differentially expressed genes and transcriptional regulation induced by salt stress in two contrasting cotton genotypes

 

Categories

ck, 4 h

ck, 24 h

ck, 4 h, 24 h

Total

N-E common

 

16,180

24,137

32,602

72,919(78.2% ) d

unigenes numbera

Cluster 1

3,459(55)c

5,311(121)

5,051(315)

13,721(491)

 

Cluster 2

4,102(60)

7,069(105)

7,922(163)

19,193(328)

E-specific

 

5,619

6,754

7,918

20,291(21.8%)

Unigenes numberb

Cluster 1

997(15)

1,365(40)

1,095(30)

3,457(85)

 

Cluster 2

1,331(27)

1,394(8)

1,541(9)

4,266(44)

All

 

21,799

30,891

40,420

93,210

Unigene numbers

Cluster 1

4,456(70)

6,6767(161)

6,146(345)

17,178(576)

 

Cluster 2

5,433(87)

8,463(113)

9,463(172)

23,339(372)

  1. Note: aN-E common unigenes means the common differentially expressed unigenes between Nan Dan Ba Di Da Hua and Earlistaple 7.
  2. bE specific unigenes means the specific DEUs expressed only in the Earlistaple 7.
  3. cNumbers in parentheses indicate the number of TF unigenes.
  4. dThe percentage of differentially expressed unigenes in both genotypes before STEM analysis.