Skip to main content

Table 5 Summary of the numbers of differentially co-expressed unigenes from the cluster 1 and cluster 2 by STEM analysis

From: Comprehensive analysis of differentially expressed genes and transcriptional regulation induced by salt stress in two contrasting cotton genotypes

  Categories ck, 4 h ck, 24 h ck, 4 h, 24 h Total
N-E common   16,180 24,137 32,602 72,919(78.2% ) d
unigenes numbera Cluster 1 3,459(55)c 5,311(121) 5,051(315) 13,721(491)
  Cluster 2 4,102(60) 7,069(105) 7,922(163) 19,193(328)
E-specific   5,619 6,754 7,918 20,291(21.8%)
Unigenes numberb Cluster 1 997(15) 1,365(40) 1,095(30) 3,457(85)
  Cluster 2 1,331(27) 1,394(8) 1,541(9) 4,266(44)
All   21,799 30,891 40,420 93,210
Unigene numbers Cluster 1 4,456(70) 6,6767(161) 6,146(345) 17,178(576)
  Cluster 2 5,433(87) 8,463(113) 9,463(172) 23,339(372)
  1. Note: aN-E common unigenes means the common differentially expressed unigenes between Nan Dan Ba Di Da Hua and Earlistaple 7.
  2. bE specific unigenes means the specific DEUs expressed only in the Earlistaple 7.
  3. cNumbers in parentheses indicate the number of TF unigenes.
  4. dThe percentage of differentially expressed unigenes in both genotypes before STEM analysis.