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Table 4 Differential expression between genders of miRNA and their gene targets

From: Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)

Gene miRNA1 Overexpressed in2
    Male Female
Probe3 Gene symbol4 Down-regulated in miR-218 oni-miR-E218 oni-miR-E224 miR-21 pma-miR-4585 oni-miR-E622 bmo-miR-2779 oni-miR-E255 oni-miR-E304
42507 fcgrt Female    − −   −    
86 amh −   −    −    +
41041 urgcp   − − −   −    
38100 ctnnd2b −   − −      
25051 g3s1a18          
25051 g3s7a7    −       
21001 prkcb          
41366 zbed3 −       +   
41366 7813 −   −       
41366 5031 − −        
41052 urgcp −   − −   −   +  
21060 cyp4f3 − − −    −    
14085 wasp1     −      
22935 urgcp    − −   −    +
27670 zebd3 −       +   
25225 cdh1          
39928 gpr144    − −   −   + +
16862 ror1 −      −    
28545 fam131c Male +        −  
10109 eci1   +   +      
5193 itgb3a     +      
13137 timm50 + + + +      
555 fndc7     +   +    
35393 nkain1       +    
6825 kiaa1468    +       
7935 rasgef1b +    +   +    
452 higd1a    + +   +    
5723 sult3       +    
30073 casp8      +     −
23873 orni-dba       +    
20878 hspa5    +       
31928 socs7       +    
9238 atp5g3    +   +     
3491 LOC100703324 +   +       
35899 LOC100707490 +     +     
800 mrpl34     +   +    
23235 psmb8      +     
13679 ankrd22     +   +   −  
24221 LOC100690239       +    
5738 sult3st1       +    
25471 rtn4ip1      +     
1524 zp3       +    
9317 gpa33    +    +    
1135 cr/20β-hsd +     +     
Rate of concordant target sites 6/15 2/5 7/17 8/15 6/6* 13/21 2/2 2/4 3/4
  1. Concordant and discordant differential expression is displayed for nine miRNAs with their forty four differentially expressed between genders predicted gene targets by a false discovery rate of p < 0.05.
  2. 1miR: expressed 3p/5p mature sequence from miRNA precursors.
  3. 2Target recognition sites for miRNAs are represented by concordant (+) or discordant (−) differential expression, respectively, assuming that up-regulated miRNAs down-regulate their target sites [74].
  4. 3Probe numbers begin with the prefix “CUST_”.
  5. 4Gene symbol based on NCBI, ENSEMBL or tilapia LOC no. urgcp and zbed3 genes represent different probes at multiple locations in the genome.
  6. *The probability that the rate of concordant target sites should occur by chance is: (1/2)6 = 0.015.
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