Chromosome | Number of SSR sequences | Polymorphic vs. DQJ | Polymorphic vs. N10 | SSR primer design | Number of Polymorphic SSRs | Percentage of polymorphisms | ||
---|---|---|---|---|---|---|---|---|
Number | % | Number | % | |||||
Chr.1 | 607 | 108 | 17.8% | 215 | 35.4% | 72 | 67 | 93.1% |
Chr.2 | 612 | 121 | 19.8% | 238 | 38.9% | 86 | 85 | 98.8% |
Chr.3 | 542 | 159 | 29.3% | 204 | 37.6% | 90 | 85 | 94.4% |
Chr.4 | 396 | 82 | 20.7% | 157 | 39.6% | 65 | 62 | 95.4% |
Chr.5 | 604 | 158 | 26.2% | 268 | 44.4% | 90 | 88 | 97.8% |
Chr.6 | 568 | 158 | 27.8% | 261 | 46.0% | 123 | 110 | 89.4% |
Chr.7 | 372 | 86 | 23.1% | 173 | 46.5% | 94 | 86 | 91.5% |
Chr.8 | 493 | 153 | 31.0% | 187 | 37.9% | 35 | 34 | 97.1% |
Chr.9 | 826 | 194 | 23.5% | 350 | 42.4% | 133 | 116 | 87.2% |
Total | 5020 | 1219 | 24.3% | 2053 | 40.9% | 788 | 733 | 93.0% |