Assembler | Sequencing data | No. contigs | Total length | No. contigs (≥1 kbp) | Total length (≥1 kbp) | Largest contig | GC (%) | N50 |
---|---|---|---|---|---|---|---|---|
CA | Illumina MiSeq | 3,785 | 86,045,090 | 3,670 | 85,991,832 | 362,075 | 30.7 | 49,810 |
MaSurCA | Illumina MiSeq | 27,180 | 96,959,781 | 16,645 | 90,159,179 | 129,528 | 30.8 | 10,719 |
CLCBio | Illumina MiSeq | 72,775 | 104,010,594 | 12,719 | 78,215,812 | 115,234 | 29.3 | 7,816 |
CA | Illumina-corrected PacBio reads | 4,436 | 94,016,717 | 4,436 | 94,016,717 | 901,957 | 31.0 | 61,260 |
CA | Illumina- and 454-corrected PacBio reads | 4,222 | 100,293,095 | 4,222 | 100,293,095 | 905,793 | 30.8 | 89,633 |
HGAP2 | PacBio reads | 2,601 | 102,405,157 | 2,601 | 102,405,157 | 1,570,895 | 30.7 | 163,655 |
HGAP2 with trimming | PacBio reads | 2,250 | 96,410,008 | 2,183 | 96,369,305 | 1,570,872 | 30.8 | 180,288 |