Table 1 MEI detection sensitivity for Alu elements
From: Tangram: a comprehensive toolbox for mobile element insertion detection
Tangram | RetroSeq | |||||||
|---|---|---|---|---|---|---|---|---|
Ploidy | Read length | Coverage | Sen (RP) | Sen (SR) | Sen (RP\SR) | Sen (SR\RP) | Sen (Union) | Sensitivity |
Het | 76 bp | 5× | 67.6% | 60.0% | 25.4% | 17.8% | 85.4% | 43.7% |
10× | 83.4% | 88.9% | 8.8% | 14.3% | 97.7% | 93.6% | ||
20× | 84.2% | 97.8% | 1.2% | 14.8% | 99.0% | 98.9% | ||
106 bp | 5× | 45.1% | 67.3% | 13.9% | 36.1% | 81.2% | 12.0% | |
10× | 77.0% | 93.0% | 4.5% | 20.5% | 97.5% | 68.9% | ||
20× | 83.4% | 98.9% | 0.4% | 15.9% | 99.3% | 97.7% | ||
Homo | 76 bp | 5× | 83.4% | 88.9% | 8.8% | 14.3% | 97.7% | 95.2% |
10× | 84.2% | 97.8% | 1.2% | 14.8% | 99.0% | 98.8% | ||
20× | 84.6% | 99.1% | 0.4% | 14.9% | 99.5% | 99.2% | ||
106 bp | 5× | 77.0% | 93.0% | 4.5% | 20.5% | 97.5% | 68.9% | |
10× | 83.4% | 98.9% | 0.4% | 15.9% | 99.3% | 97.7% | ||
20× | 83.8% | 99.3% | 0.4% | 15.9% | 99.7% | 98.9% | ||