Table 2 Genotype accuracy results of MEI detection using Tangram and RetroSeq on simulated data for Alus
From: Tangram: a comprehensive toolbox for mobile element insertion detection
| Â | Â | Tangram | RetroSeq | ||||
|---|---|---|---|---|---|---|---|
Read length | Coverage | Het | Homo | Total | Het | Homo | Total |
76 bp | 5× | 99.3% | 90.8% | 97.6% | 2.3% | 92.8% | 20.4% |
10× | 100.0% | 94.2% | 98.8% | 40.6% | 63.6% | 45.2% | |
20× | 100.0% | 98.4% | 99.7% | 96.5% | 8.8% | 78.9% | |
106 bp | 5× | 96.6% | 93.4% | 96.0% | 0.0% | 91.6% | 18.3% |
10× | 99.6% | 92.6% | 98.2% | 38.8% | 64.4% | 43.9% | |
20× | 100.0% | 95.6% | 99.1% | 95.1% | 10.8% | 19.6% | |