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Table 2 Genotype accuracy results of MEI detection using Tangram and RetroSeq on simulated data for Alus

From: Tangram: a comprehensive toolbox for mobile element insertion detection

  

Tangram

RetroSeq

Read length

Coverage

Het

Homo

Total

Het

Homo

Total

76 bp

99.3%

90.8%

97.6%

2.3%

92.8%

20.4%

10×

100.0%

94.2%

98.8%

40.6%

63.6%

45.2%

20×

100.0%

98.4%

99.7%

96.5%

8.8%

78.9%

106 bp

96.6%

93.4%

96.0%

0.0%

91.6%

18.3%

10×

99.6%

92.6%

98.2%

38.8%

64.4%

43.9%

20×

100.0%

95.6%

99.1%

95.1%

10.8%

19.6%