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Table 8 PCR validation results for the Tangram MEI detector

From: Tangram: a comprehensive toolbox for mobile element insertion detection

  ALU L1 SVA HERV-K Total
  Random Novel Random Novel Random Novel Random Novel Random Novel
Analyzed by PCR 68 64 7 3 3 6 1 3 80 78
Validated Loci 66 58 7 3 3 6 1 2 77 69
Invalidated Loci 2 6 0 0 0 0 0 1 2 7
FDR 2.94% 9.38% 0.00% 0.00% 0.00% 0.00% 0.00% 33.33% 2.53% 9.21%
  1. Validation results and estimated false discovery rates are shown for MEI calls from 23 1000 Genomes Project Phase 1 samples.