Table 8 PCR validation results for the Tangram MEI detector
From: Tangram: a comprehensive toolbox for mobile element insertion detection
| Â | ALU | L1 | SVA | HERV-K | Total | |||||
|---|---|---|---|---|---|---|---|---|---|---|
| Â | Random | Novel | Random | Novel | Random | Novel | Random | Novel | Random | Novel |
Analyzed by PCR | 68 | 64 | 7 | 3 | 3 | 6 | 1 | 3 | 80 | 78 |
Validated Loci | 66 | 58 | 7 | 3 | 3 | 6 | 1 | 2 | 77 | 69 |
Invalidated Loci | 2 | 6 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 7 |
FDR | 2.94% | 9.38% | 0.00% | 0.00% | 0.00% | 0.00% | 0.00% | 33.33% | 2.53% | 9.21% |