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Table 5 Positional enrichment of SNPs identified by association and outlier methods

From: Targeting environmental adaptation in the monocot model Brachypodium distachyon: a multi-faceted approach

Method

> 5 kbp upstream

< 5 kbp upstream

Genic

Total SNPs

Predicted genes involved

LFMM

276 (17%)

439 (27%)

901 (56%)

1616

1035

GAPIT

7 (20%)

10 (28.6%)

18 (51.4%)

35

30

Bayescan

245 (25.7%)

247 (25.9%)

461(48.4%)

953

490

  1. Distribution of SNPs deemed significant in relation to predicted genes. Loci were grouped as outside predicted gene regions, within 5 kbp upstream of predicted genes, or within predicted genes.
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BMC Genomics

ISSN: 1471-2164

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