Modified motif prediction of the PaP1 genome. (A) Modification scores by cognate base. We selected the top 1,400 context sequences (with a score cutoff of 37) for analysis. A file of 1,400 sequences is suitable as the input for the online motif finding server (MEME). (B) Putative modified motifs determined from the PaP1 genome. A left “+” means forward and the corresponding right “–” means reverse complement.