Dual transcriptional profiling of mice and Toxoplasma gondii during acute and chronic infection

BMC Genomics

Table 5 Mouse DEGs more abundant in acute, but not chronic infection

Gene ID	Gene name	Description	Fold change (Acute/uninfected)	Fold change (Chronic/uninfected)
ENSMUSG00000088071	Gm22818	predicted gene, 22818	276	1
ENSMUSG00000002831	Gbp10	guanylate-binding protein 10	183	No transcripts in Chronic
ENSMUSG00000002833	Gbp6	guanylate binding protein 6	130	No transcripts in Chronic
ENSMUSG00000024334	Gbp4*	guanylate binding protein 4	61	No transcripts in Chronic
ENSMUSG00000075010	Gbp8*	guanylate-binding protein 9	61	No transcripts in Chronic
ENSMUSG00000085377	Gbp9*	guanylate-binding protein 8	61	No transcripts in Chronic
ENSMUSG00000098049	BC042782^#	cDNA sequence BC042782	52	1.8
ENSMUSG00000079362	n-R5s189^#	nuclear encoded rRNA 5S 189	52	1.8
ENSMUSG00000005800	Plin4	perilipin 4	27	1

The first column is the ensemble gene ID and the second is the gene name. The third column is the official gene symbol from ensemble.org, and the fourth column is the fold change as average acute FPKM value was divided by uninfected. The fifth column is the fold change as average chronic FPKM value was divided by uninfected. Only genes with a p-value and q-value <0.05 were considered differentially expressed. * and ^# mark genes located in the same contiguous loci and thus reads mapping to this area were combined.

ISSN: 1471-2164