Table 2 A subset of SNPs significantly associated with SDS resistance and the adjacent candidate genes
From: Genome-wide association mapping of quantitative resistance to sudden death syndrome in soybean
Trait | SNP | Chra | Positionb | P | R2(%) | QTLc | Candidate genese |
|---|---|---|---|---|---|---|---|
DX(P1) | Gm02-707483 | 2 | 707483 | 3.07 × 10-5 | 5.6 | Nd | PPR repeat (common disease resistance genes, [38]) |
DI(P2) | ss244884978 | 2 | 49773810 | 3.60 × 10-4 | 6.4 | [39] | Cellulose synthase (disease resistance genes, [40]) |
DX(P2) | ss245842048 | 6 | 8979504 | 8.15 × 10-5 | 7.7 | N | Phosphatidylinositol kinase (immune responses, [41]) |
DX(P2) | ss246038868 | 6 | 43945601 | 3.37 × 10-5 | 5.7 | [42] | LRR gene (pathogen recognition, [43]) |
DX(P1) | Gm07-15654480 | 7 | 15654480 | 4.36 × 10-5 | 5.5 | N | Oxysterol binding protein (upregulated in defense response, [44]) |
DS(P1) | Gm07-36959086 | 7 | 36959086 | 8.86 × 10-6 | 6.5 | N | Ubiquitin-like protein (upregulated in defense response, [45]) |
DX(P2) | ss246580442 | 8 | 18469361 | 8.85 × 10-7 | 10.9 | N | Zinc finger (disease resistance genes, [46]) |
DX(P2) | ss246585278 | 8 | 18840490 | 3.55 × 10-5 | 8.1 | N | F-box (defense response, [47]) |
DI(P1) | Gm09-43648118 | 9 | 43648118 | 6.90 × 10-5 | 11.6 | N | Phosphopantetheine (disease response, [48]) |
DI(P1) | Gm11-37426559 | 11 | 37426559 | 2.23 × 10-5 | 5.6 | N | Amino acid transporter (disease resistance genes, [49]) |
DI(P1) | Gm13-4584015 | 13 | 4584015 | 3.50 × 10-6 | 7.2 | [50] | LRR gene (pathogen recognition, [43]) |
DX(P2) | ss248117124 | 13 | 33655223 | 86 × 10-4 | 5.7 | N | Serine/threonine protein kinase (disease defense response, [51]) |
DI(P1) | Gm14-4636247 | 14 | 4636247 | 6.53 × 10-5 | 5.3 | N | Ascorbate oxidase gene (upregulated in defense response, [52]) |
DI(P2) | ss248566590 | 15 | 5978279 | 7.98 × 10-4 | 5.8 | N | Molecular chaperone (plant defense response, [53]) |
DX(P1) | ss248698930 | 15 | 20239752 | 6.33 × 10-5 | 7.7 | N | Serine/threonine protein kinase (disease defense response, [51]) |
DX(P2) | ss249511029 | 18 | 1611921 | 8.04 × 10-6 | 9.3 | [42] | Hypoxia induced protein (disease defense signaling, [54]) |
DX(P1) | Gm18-1709751 | 18 | 1709751 | 3.79 × 10-9 | 10.6 | [42] | Receptor like kinase (disease resistance genes, [11]) |
DI(P2) | ss249517154 | 18 | 2113196 | 4.04 × 10-5 | 8.3 | [42] | unknown |
DI(P2) | ss249520656 | 18 | 2434513 | 6.9 × 10-6 | 9.5 | [55] | Glycosyltransferase (disease resistance genes, [56]) |
DI(P1) | Gm19-34890716 | 19 | 34890716 | 2.16 × 10-5 | 5.8 | N | Cupins superfamily protein |