|  |  |  | Flanking region2(SNPs3/total SNPs4(D’)5) | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|
 |  |  |  | Without imputation | With imputation | ||||||
Gene | Start1 | Stop1 | Length (bp) | Affy5.0 | Affy6.0 | Illumina550K | Union | Affy5.0 | Affy6.0 | Illumina550K | Union |
HLA_A | 30,018,310 | 30,021,632 | 3,322 | 200Â K (14/122 (0.76)) | 350Â K (16/299 (0.69)) | 150Â K (14/121 (0.79)) | 200Â K (16/329 (0.74)) | 150Â K (19/352 (0.81)) | 150Â K (17/364 (0.80)) | 200Â K (17/515 (0.73)) | 150Â K (16/366 (0.80)) |
HLA_B | 31,429,630 | 31,432,914 | 3,284 | 150Â K (20/100 (0.61)) | 100Â K (20/123 (0.66)) | 100Â K (18/131 (0.59)) | 100Â K (21/237 (0.64)) | 100Â K (24/282 (0.67)) | 40Â K (21/110 (0.71)) | 30Â K (22/102 (0.71)) | 40Â K (22/110 (0.71)) |
HLA_C | 31,344,509 | 31,347,834 | 3,325 | 150Â K (17/104 (0.64)) | 20Â K (14/25 (0.83)) | 10Â K (13/22 (0.82)) | 30Â K (17/95 (0.79)) | 30Â K (19/137 (0.83)) | 20Â K (18/88 (0.85)) | 20Â K (16/88 (0.85)) | 20Â K (18/88 (0.85)) |
HLA_DPB1 | 33,151,738 | 33,162,954 | 11,216 | 100Â K (13/88 (0.49)) | 150Â K (15/154 (0.47)) | 100Â K (15/120 (0.52)) | 150Â K (18/280 (0.47)) | 20Â K (34/113 (0.79)) | 100Â K (33/352 (0.54)) | 150Â K (35/452 (0.51)) | 100Â K (35/355 (0.54)) |
HLA_DQB1 | 32,735,635 | 32,742,419 | 6,784 | 40Â K (12/15 (0.61)) | 40Â K (11/30 (0.71)) | 30Â K (12/13 (0.72)) | 30Â K (13/29 (0.70)) | 30Â K (16/52 (0.69)) | 30Â K (16/52 (0.69)) | 30Â K (15/52 (0.69)) | 30Â K (15/52 (0.69)) |
HLA_DRB1 | 32,654,527 | 32,665,559 | 11,032 | 200Â K (16/108 (0.60)) | 100Â K (16/27 (0.73)) | 150Â K (17/108 (0.61)) | 150Â K (21/204 (0.61)) | 150Â K (25/325 (0.61)) | 100Â K (22/91 (0.76)) | 200Â K (25/523 (0.58)) | 150Â K (24/326 (0.62)) |