Maize and millet transcription factors annotated using comparative genomic and transcriptomic data

BMC Genomics

Table 6 Significance levels of TF and TC Families in different millet tissues

Family	Leaf	Root	Stem	Tassel
AP2	0.99945	0.76718	0.98899	0.56275
ARF	0.01159	0.06865	0.01158	0
AUX/IAA	0.47105	0.03618	0.03614	0.00532
B3	0.99396	0.95681	0.99811	0.95669
C2H2	0.89246	0.96644	0.82544	0.99639
C3H	0.00137	0	0.00137	0.00137
CAMTA	0	0	0	0
CPP	0	0.31277	0	0
DBB	0	0	0.25758	0.25749
Dof	0.77736	0.9161	0.77722	0.26481
E2F/DP	0	0	0.25758	0
ERF	0.81309	0.38687	0.97696	0.99993
FAR1	0	0	0	0
G2-like	0.14324	0.59204	0.00409	0.01937
GATA	0	0.6566	0.01406	0.08018
GRAS	0.21535	0.54695	0.70613	0.8295
GeBP	0	0.39791	0.11863	0.11857
HB-other	0	0.25768	0	0
HD-ZIP	0.64978	0.31871	0.31847	0.07824
HMG	0.51145	0.17489	0.17481	0
HSF	0.69426	0	0.09377	0.25772
LBD	1	0.87495	0.99906	0.99983
M-type	0.95506	0.34874	0.98958	0.34845
MBD	0.17489	0.17489	0.17481	0
MIKC	0.73159	0.99674	0.99908	0.93195
MYB	1	0.83698	0.99173	0.97335
MYB_related	0.02464	0.48928	0.0246	0.06101
NAC	0.98971	0.04414	0.79086	0.99741
NF-YA	0	0	0.2122	0.21211
NF-YB	0.17489	0.17489	0	0.17473
NF-YC	0	0.69635	0.11863	0.69607
Nin-like	0.1187	0.1187	0.39777	0.88753
OFP	1	1	0.99653	0.61825
SBP	0.40284	0.83409	0.03707	0
Sigma54_activat	0	0	0	0
TALE	0.98772	0.06865	0.06859	0.06852
TCP	0.73579	0.89168	0.73563	0
Trihelix	0.36847	0.0586	0.00954	0.05848
WRKY	0.96298	0.00631	0.96289	1
YABBY	0.89056	0.99982	0.89049	0
ZF-HD	0.89056	0.97861	0.25758	0.25749
bHLH	0.99999	0.99964	0.99472	0.95644
bZIP	0.07649	0.01792	0.07635	0.01784
mTERF	0.00206	0.76309	0.00205	0.00205
BED	0	0	0	0.31257
TAZ	0.31277	0	0.31267	0.71374

Significance levels are based on P-values reported by Fisher’s exact test, a lower significance level means that larger amount of genes in a family are expressed in a tissue group. A P-value lower than 0.05 is regarded as significant.

ISSN: 1471-2164