Table 2 The genome content and annotation of Ch. tentans
From: The Chironomus tentans genome sequence and the organization of the Balbiani ring genes
Genome | |
|---|---|
Genome size | ~200 Mb |
Karyotype | 2n = 8 |
GC content | 31.2% |
High copy repeat content | |
Complex repeats | 11% |
Minisatellites/Low-complexity repeats | 4% |
Coding regions (excluding introns/UTRs) | 9% |
Transcripts | |
Assembled transcripts (sequences/clusters) | 107,717/66,004 |
High-confidence transcripts | 9,613 |
Annotation | |
Predicted coding gene loci | 15,120 |
Fraction of genes with introns | 83% |
Average exon/intron size | 312 bp/1,103 bp |
Largest intron size | 97 Kb |
Fraction of short (<80 bp) introns | 41% |