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Table 1 Changes in expression levels of the genes involved in the 20E signal transduction pathway

From: Transcriptomic analysis of developmental features of Bombyx mori wing disc during metamorphosis

Gene RNA-Seq ID L5D6-RPKM PP-RPKM P0-RPKM L5D6 vs PP PP vs P0
USP 1 Bm_nscaf2847_250 34.71 16.10 19.17 - +
  Bm_nscaf2847_251 20.51 14.60 21.78 - +
ECR A Bm_nscaf2855_215 0.93 4.57 0.93 + -
ECR B2 Bm_nscaf2855_217 21.95 2.09 8.55 -3.40* +
ECR B1 Bm_nscaf2855_219 31.24 24.62 18.58 - -
E74 1 Bm_nscaf2888_430 none 3.07 162.43 + 5.73*
  Bm_nscaf2888_433 19.63 5.34 64.70 - 3.60*
E75B Bm_nscaf2859_001 45.67 100.29 168.69 -1.13* +
E75C Bm_nscaf2859_003 13.21 none 4.83 - +
HR3 Bm_nscaf2964_066 2.03 268.66 4.91 7.05* -5.78*
BR-C A-NZ1 Bm_nscaf2970_078 178.90 235.58 67.39 + -
BR-C Z4 Bm_nscaf2970_079 71.94 122.93 38.45 + -
β FTZ-F1 1 Bm_nscaf1690_227 4.32 9.94 none + -13.28*
  Bm_nscaf1690_228 8.48 7.36 1.71 - -
  1. 1These genes have more than one RNA-Seq sequences. Gene expression level was calculated by RPKM method. "none" means that the expression of the gene was not detected. Asterisks indicate the gene, whose expression level had more than two folds difference between two stages and False Discovery Rate (FDR) was less than 0.001, was identified as differentially expressed at this developmental stage. "+" represents up-regulation, and "-" represents down-regulation. And the values in the last two columns were calculated by Log2(PP-RPKM/L5D6-RPKM) or Log2(P0-RPKM/PP-RPKM) and only those differentially expressed genes are given.