Transcriptomic analysis of developmental features of Bombyx mori wing disc during metamorphosis

BMC Genomics

Table 2 Changes in expression level of the genes involved in the JH signal transduction pathway

Gene	RNA-Seq ID	L5D6-RPKM	PP-RPKM	P0-RPKM	L5D6 vs PP	PP vs P0
Met1	Bm_nscaf2828_039	45.41	11.65	8.92	-1.96*	-
Met2 ¹	Bm_nscaf1690_114	1.42	none	none	-	→
	Bm_nscaf1690_115	1.85	1.64	0.19	-	-
SRC ¹	Bm_nscaf3078_04	none	3.35	none	+	-
	Bm_nscaf3078_05	8.99	10.38	3.22	+	-1.69 *
Kr-h1	Bm_nscaf2589_179	95.84	2.77	1.77	-5.11 *	-

¹These genes have more than one RNA-Seq sequences. Expression level of the genes was calculated by RPKM method. "none" means that the expression of the genes was not detected. "+" represents up-regulation, "-" represents down-regulation, and "→" represents no change. Asterisks indicate the gene, whose expression level had more than two folds difference between two stages and False Discovery Rate (FDR) was less than 0.001, was identified as differentially expressed at this developmental stage. And the values in the last two columns were calculated by Log₂(PP-RPKM/L5D6-RPKM) or Log₂(P0-RPKM/PP-RPKM) and only those differentially expressed genes are given.

ISSN: 1471-2164