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Table 1 Empirical Type I error rate (empirical power) of IUTA_SKK at nominal Type I error rate 0.05 for various levels of read coverage for a selection of genes

From: IUTA: a tool for effectively detecting differential isoform usage from RNA-Seq data

Gene No. of isoforms Read coverage
10 30 50 70 90 110
Zfp407 2 0.06 (0.99) 0.08 (1.00) 0.08 (1.00) 0.08 (1.00) 0.08 (1.00) 0.07 (1.00)
Loxl2 3 0.07 (1.00) 0.07 (1.00) 0.10 (0.99) 0.09 (1.00) 0.11 (0.99) 0.11 (0.99)
Bptf 5 0.30 (0.96) 0.29 (0.96) 0.27 (0.96) 0.27 (0.95) 0.25 (0.95) 0.23 (0.96)
Pde4dip 7 0.04 (0.92) 0.04 (0.94) 0.07 (0.95) 0.04 (0.93) 0.06 (0.96) 0.07 (0.96)
Dido1 8 0.11 (0.87) 0.10 (0.89) 0.10 (0.90) 0.11 (0.88) 0.11 (0.87) 0.10 (0.89)
Ifi203 8 0.09 (0.77) 0.10 (0.76) 0.08 (0.77) 0.09 (0.70) 0.10 (0.76) 0.09 (0.74)
Stab2 8 0.08 (0.35) 0.07 (0.43) 0.06 (0.45) 0.07 (0.44) 0.07 (0.51) 0.08 (0.44)