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Table 1 Summary of the NGS HLA Omixon software sequencing metrics from the MiSeq run

From: High-throughput multiplex HLA genotyping by next-generation sequencing using multi-locus individual tagging

Locus

Average depth of all exonsa

Allele ratiosb

Detection <100% of all exonsc

A

1311 (87.4-2580)

0.7-1.25

38 (96.2-99.9%)

B

1192 (104–2820)

0.78-1.24

112 (92.3-99.9%)

C

1527 (94–3570)

0.59-1.76

114 (98.8-99.9%)

DRB1

475 (26.8-1520)

0.35-3.02

5 (92.9-95.4%)

  1. aAverage exonic sequence read depth per base pair.
  2. bRatio of average sequence read coverage of alleles one and two.
  3. cNumber of alleles with less than 100% sequence coverage.
  4. The range in sequence coverage is indicated in parentheses.
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BMC Genomics

ISSN: 1471-2164

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