Table 1 Breast cancer TCGA datasets used in this study
From: Statistical measures of transcriptional diversity capture genomic heterogeneity of cancer
Data | TCGA file link | N |
|---|---|---|
Tumor Information | https://tcga-data.nci.nih.gov/docs/publications/brca_2012/BRCA.datafreeze.20120227.txt | 466 |
PAM50 Subtype | https://tcga-data.nci.nih.gov/docs/publications/brca_2012/BRCA.547.PAM50.SigClust.Subtypes.txt | 466 |
Gene Expression-Level 3 | http://tcga-data.nci.nih.gov/docs/publications/brca_2012/BRCA.Gene_Expression.Level_3.tar | 547 |
Somatic Mutations | 463 | |
Copy Number Alterations | http://tcga-data.nci.nih.gov/docs/publications/brca_2012/brca_hg19_qc.merged.seg | 466 |
Gene Models (RefSeq) | UCSC table browser with track “RefSeq Genes” of genome version Feb. 2009 GRCh37/hg19 (http://genome.ucsc.edu/cgi-bin/hgTables) |