Figure 2
From: KvarQ: targeted and direct variant calling from fastq reads of bacterial genomes
Interactive inspection of “coverage”. This screenshot shows the coverage over a short region of interest (3 base pairs within vertical red lines, corresponding to codon 315 in katG) and the surrounding flanking sequence. Note the mutation in the middle of the three base pair long sequence (in green, text description at bottom of window). The decrease of coverage on both sides is due to the minimum overlap that is set to a value equal to the length of the two flanking regions.