Skip to main content

Table 1 Co‒occurrence annotations of GO and KEGG terms found by GeneCodis

From: Altered gene expression patterns of innate and adaptive immunity pathways in transgenic rainbow trout harboring Cecropin P1 transgene

Biological terms Genes (I/R)1 P value2 Identifier
Spleen    
Lysosome 45/106 7.68E-08 KEGG: 04142
Carbohydrate metabolic process 66/228 1.71E-04 GO: 0005975
Tuberculosis 15/25 2.04E-04 KEGG: 05152
Phagosome    KEGG: 04145
Phagosome 32/82 2.26E-04 KEGG: 04145
Cell adhesion 91/353 2.49E-04 GO: 0007155
Lysosome 10/13 3.69E-04 KEGG: 04142
Tuberculosis    KEGG: 05152
Lysosome 10/14 9.47E-04 KEGG: 04142
Phagosome    KEGG: 04145
Lysosome 9/12 1.20E-03 KEGG: 04142
Rheumatoid arthritis    KEGG: 05323
Lysosome 9/12 1.20E-03 KEGG: 04142
Tuberculosis    KEGG: 05152
Phagosome    KEGG: 04145
Amino sugar and nucleotide sugar metabolism 19/43 1.28E-03 KEGG: 00520
Liver    
Glycolysis/Gluconeogenesis 17/43 7.76E-03 KEGG: 00010
Cell differentiation 71/322 9.78E-03 GO: 0030154
PPAR signaling pathway 17/47 1.98E-02 KEGG: 03320
Lipid metabolic process 9/17 2.63E-02 GO: 0006629
PPAR signaling pathway    KEGG: 03320
Kidney    
Focal adhesion 29/47 2.72E-07 KEGG: 04510
ECM-receptor interaction    KEGG: 04512
Protein digestion and absorption 31/56 9.63E-07 KEGG: 04974
ECM-receptor interaction 33/61 9.76E-07 KEGG: 04512
PPAR signaling pathway 27/47 2.66E-06 KEGG: 03320
Protein digestion and absorption 12/13 7.68E-06 KEGG: 04974
Focal adhesion    KEGG: 04510
ECM-receptor interaction    KEGG: 04512
Focal adhesion 15/21 7.04E-05 KEGG: 04510
Amoebiasis    KEGG: 05146
ECM-receptor interaction    KEGG: 04512
Signal transduction 196/743 1.58E-04 GO: 0007165
Translation 71/216 2.34E-04 GO: 0006412
Focal adhesion 18/31 3.09E-04 KEGG: 04510
Cell adhesion    GO: 0007155
ECM-receptor interaction    KEGG: 04512
Protein digestion and absorption 9/10 4.16E-04 KEGG: 04974
Focal adhesion    KEGG: 04510
Amoebiasis    KEGG: 05146
ECM-receptor interaction    KEGG: 04512
  1. For spleen and kidney, only the first 10 most significant groups of terms were listed. 1I/R, Number of annotated genes in the input list/number of annotated genes in the reference list; 2P values were obtained through hypergeometric analysis and adjusted for multiple corrections using FDR.