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Table 2 Number of genes differentially expressed in AltDE and AltDE1

From: RNA sequencing provides evidence for functional variability between naturally co-existing Alteromonas macleodii lineages

Strain AltDE AltDE1
Total genes in the genome 4389 4748
Total core genes in the genome (%) a 3631 (83) 3631 (76)
Total flexible genes in the genome (%) a 758 (17) 1117 (24)
Comparison Temperature (13-25 °C) Media (RM-MMG) Media (MMG-STR) Temperature (13-25 °C) Media (RM-MMG) Media (MMG-STR)
Total genes differentially expressed (%) a 985 (22) 1037 (24) 1627 (37) 1026 (22) 1362 (29) 2771 (58)
Total core genes differentially expressed (%) b 763 (21) 809 (22) 1286 (35) 684 (19) 978 (27) 2143 (59)
Contribution of core genes to total genes differentially expressed 77% 78% 79% 67% 72% 77%
Total flexible genes differentially expressed (%) c 222 (29) 230 (30) 342 (45) 342 (30) 384 (34) 629 (56)
Contribution of flexible genes to total genes differentially expressed 23% 22% 21% 33% 28% 23%
  1. RM, nutrient rich marine medium.
  2. MMG, minimal medium with 1% glucose.
  3. STR, starvation.
  4. Genes with a log2 fold change of more than 2 are considered differentially expressed.
  5. apercentage = value/total number of genes in the genome.
  6. bpercentage = value/total core genes.
  7. cpercentage = value/total flexible genes.