Figure 7
From: Evaluation of variant identification methods for whole genome sequencing data in dairy cattle
Non-reference sensitivity (a) and non-reference discrepancy (b) for single nucleotide variants identified using Platypus Primitives, Samtools, UnifiedGenotyper and Haplotype Caller (single vs. multi sample variant identification) using variants identified with the Illumina BovineHD BeadChip® as a gold standard. Indel realignment and base quality score recalibration were conducted for both single and multi sample calling results.