Table 3 MiRNAs and target genes involved in lignification and sugar and acid pathways
From: Identification of miRNAs involved in pear fruit development and quality
miRNA name | Target gene ID | Target gene description | Pathway |
|---|---|---|---|
miR397a | Pbr003857.1 | Laccase | Metabolic pathways(0.7902142) |
Pbr012358.1 | Metabolic pathways(0.7902142) | ||
Pbr012395.1 | Metabolic pathways(0.7902142) | ||
Pbr012398.1 | Metabolic pathways(0.7902142) | ||
Pbr013101.1 | Metabolic pathways(0.7902142) | ||
Pbr014332.1 | Metabolic pathways(0.7902142) | ||
Pbr018935.1 | Metabolic pathways(0.7902142) | ||
Pbr022393.1 | Metabolic pathways(0.7902142) | ||
Pbr022396.1 | Metabolic pathways(0.7902142) | ||
Pbr023439.1 | Metabolic pathways(0.7902142) | ||
Pbr023443.1 | Metabolic pathways(0.7902142) | ||
Pbr027989.1 | Metabolic pathways(0.7902142) | ||
Pbr028392.1 | Metabolic pathways(0.7902142) | ||
Pbr029302.1 | Metabolic pathways(0.7902142) | ||
Pbr029309.1 | Metabolic pathways(0.7902142) | ||
Pbr033893.1 | Metabolic pathways(0.7902142) | ||
Pbr033951.1 | Metabolic pathways(0.7902142) | ||
Pbr034945.1 | Metabolic pathways(0.7902142) | ||
Pbr034948.1 | Metabolic pathways(0.7902142) | ||
Pbr035745.1 | Metabolic pathways(0.7902142) | ||
Pbr035929.1 | Metabolic pathways(0.7902142) | ||
Pbr035962.1 | Metabolic pathways(0.7902142) | ||
Pbr038866.1 | Metabolic pathways(0.7902142) | ||
Pbr038988.1 | Metabolic pathways(0.7902142) | ||
Pbr041372.1 | Metabolic pathways(0.7902142) | ||
Pbr041924.1 | Metabolic pathways(0.7902142) | ||
Pbr042315.1 | Metabolic pathways(0.7902142) | ||
miR1132 | Pbr031785.3 | Malate_PEPCK_PEPCK-ATP | Â |
miR1318 | Pbr015038.1 | Citrate_ACL_ACLY | Metabolic pathways(0.7902142),Microbial metabolism in diverse environments(0.9297261),Biosynthesis of secondary metabolites(0.9498542),Citrate cycle (TCA cycle)(0.997454) |
miR2635 | Pbr038213.1 | Malate_PEPC_PEPC | Carbon fixation in photosynthetic organisms(0.7361554),Metabolic pathways(0.7902142),Methane metabolism(0.9082858),Pyruvate metabolism(0.9296067),Microbial metabolism in diverse environments(0.9297261),Carbon fixation pathways in prokaryotes(0.9871138) |
miR394a | Pbr020930.1 | Malate_MalT | Â |
Pbr023085.1 | Malate_MalT | Â | |
miR396b | Pbr006726.1 | DNA_G6PDH_G6PDH | Metabolic pathways(0.7902142),Microbial metabolism in diverse environments(0.9297261),Biosynthesis of secondary metabolites(0.9498542),Pentose phosphate pathway(0.975254),Glutathione metabolism(0.9974516) |
Pbr010337.1 | Malate_MalT | Â | |
Pbr016769.1 | Malate_MalT | Â | |
Pbr016770.1 | Malate_MalT | Â | |
miR5077 | Pbr023965.1 | Sugar_HT | Â |
Pbr032130.1 | Sugar_HT | Meiosis - yeast(0.9924183) | |
Pbr033292.1 | Sugar_HT | Â | |
miR5500 | Pbr029752.1 | Sugar_HK_HK | Galactose metabolism(0.2583273),Butirosin and neomycin biosynthesis(0.4998806),Streptomycin biosynthesis(0.5326464),Amino sugar and nucleotide sugar metabolism(0.6427769),Fructose and mannose metabolism(0.6615606),Metabolic pathways(0.7902142),Insulin signaling pathway(0.878923),Carbohydrate digestion and absorption(0.919634),Microbial metabolism in diverse environments(0.9297261),Biosynthesis of secondary metabolites(0.9498542),Starch and sucrose metabolism(0.9606751),Glycolysis / Gluconeogenesis(0.9894463),Type II diabetes mellitus(0.9906034) |
miR825* | Pbr016798.1 | Sugar_ALD-ALD1 | Phenylalanine, tyrosine and tryptophan biosynthesis(1.488743e-06),Sulfur metabolism(0.04454147),Fructose and mannose metabolism(0.6615606),Carbon fixation in photosynthetic organisms(0.7361554),Metabolic pathways(0.7902142),Cysteine and methionine metabolism(0.9034785),Microbial metabolism in diverse environments(0.9297261),Biosynthesis of secondary metabolites(0.9498542),Pentose phosphate pathway(0.975254),Glycolysis / Gluconeogenesis(0.9894463) |
miR952b | Pbr012392.1 | Sugar_F16BP_F16BP1 | Fructose and mannose metabolism(0.6615606),Carbon fixation in photosynthetic organisms(0.7361554),Metabolic pathways(0.7902142),Insulin signaling pathway(0.878923),Methane metabolism(0.9082858),Microbial metabolism in diverse environments(0.9297261),Biosynthesis of secondary metabolites(0.9498542),Pentose phosphate pathway(0.975254),Glycolysis / Gluconeogenesis(0.9894463) |
Pbr012401.1 | Sugar_F16BP_F16BP1 | Fructose and mannose metabolism(0.6615606),Carbon fixation in photosynthetic organisms(0.7361554),Metabolic pathways(0.7902142),Insulin signaling pathway(0.878923),Methane metabolism(0.9082858),Microbial metabolism in diverse environments(0.9297261),Biosynthesis of secondary metabolites(0.9498542),Pentose phosphate pathway(0.975254),Glycolysis / Gluconeogenesis(0.9894463) | |
Pbr035932.1 | Sugar_F16BP_F16BP1 | Fructose and mannose metabolism(0.6615606),Carbon fixation in photosynthetic organisms(0.7361554),Metabolic pathways(0.7902142),Insulin signaling pathway(0.878923),Methane metabolism(0.9082858),Microbial metabolism in diverse environments(0.9297261),Biosynthesis of secondary metabolites(0.9498542),Pentose phosphate pathway(0.975254),Glycolysis / Gluconeogenesis(0.9894463) |