Table 2 RNA-seq mapping statistics for pre- and post-globin reduction samples
From: Increasing gene discovery and coverage using RNA-seq of globin RNA reduced porcine blood samples
pre-Globin Reduction | post-Globin Reduction | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample | RINa | Total readsb | Aligned readsb | Expressed genesc | HBA readsb | HBB readsb | RINa | Total readsb | Aligned readsb | Expressed genesc | HBA readsb | HBB readsb |
1 | 7.8 | 23.66 | 22.45 | 11269 | 7.57 | 4.19 | 8.0 | 18.00 | 16.45 | 12175 | 2.35 | 1.60 |
2 | 7.7 | 19.73 | 18.57 | 11591 | 5.43 | 3.40 | 7.8 | 21.62 | 19.56 | 12736 | 2.16 | 1.29 |
3 | 7.6 | 26.12 | 24.62 | 11445 | 8.24 | 4.96 | 7.7 | 21.68 | 19.91 | 12246 | 3.69 | 2.17 |
4 | 7.9 | 23.78 | 22.29 | 11796 | 6.68 | 3.80 | 7.5 | 25.57 | 22.94 | 12942 | 1.93 | 1.28 |
5 | 7.5 | 23.67 | 22.38 | 10966 | 7.23 | 4.63 | 7.4 | 19.81 | 17.59 | 12409 | 0.29 | 0.26 |
6 | 6.8 | 24.58 | 22.79 | 10671 | 6.30 | 3.82 | 7.0 | 17.79 | 15.60 | 11613 | 0.26 | 0.17 |
7 | 6.8 | 23.53 | 21.42 | 11517 | 2.82 | 2.76 | 6.4 | 21.03 | 18.50 | 11736 | 0.34 | 0.20 |
8 | 6.5 | 22.01 | 20.18 | 11900 | 4.54 | 2.13 | 5.9 | 18.40 | 16.20 | 12203 | 0.08 | 0.06 |
9 | 5.0 | 45.16 | 41.89 | 11464 | 9.36 | 12.64 | 4.9 | 25.33 | 21.86 | 11834 | 0.28 | 0.55 |
10 | 4.7 | 39.39 | 36.09 | 11319 | 8.46 | 8.37 | 4.5 | 34.33 | 29.36 | 12214 | 0.17 | 0.27 |
11 | 4.2 | 46.71 | 42.13 | 11292 | 8.92 | 9.74 | 4.1 | 34.64 | 29.45 | 11680 | 0.31 | 0.74 |
12 | 3.7 | 44.94 | 41.68 | 10441 | 9.96 | 12.16 | 3.5 | 31.81 | 27.31 | 11322 | 0.30 | 0.48 |