Whole genome sequencing of Turkish genomes reveals functional private alleles and impact of genetic interactions with Europe, Asia and Africa

Table 1 Summary of the Turkish genome project

Sample ID	Coverage	SNPs	Novel SNPs	Indels¹	Novel indels	Deletions²	Novel deletions³
06A010111	36.45	3,238,983	40,780	915,917	223,334	1,939	245
08P210611	36.58	3,258,882	45,582	904,093	216,377	1,690	176
24D220611	39.68	3,274,222	46,468	912,202	219,227	1,711	202
25A220611	33.37	3,241,675	46,364	905,503	217,648	1,676	188
31P140611	36.72	3,238,064	47,316	903,106	217,024	1,718	198
32A140611	33.56	3,268,102	42,525	907,291	217,036	1,726	192
33M140611	32.41	3,255,966	43,745	902,853	214,684	1,743	197
34S291210	37.66	3,251,620	42,144	914,379	221,851	1,881	223
35C240511	34.42	3,241,914	39,450	910,516	219,466	1,735	184
38I220611	35.44	3,231,738	46,475	902,232	216,872	1,681	183
42S291210	31.33	3,254,639	44,041	887,958	208,584	1,669	168
48S210611	38.17	3,302,283	43,599	914,063	218,293	1,700	178
50G301210	37.80	3,276,506	43,416	920,203	223,146	1,930	249
52C130611	32.63	3,269,131	44,621	916,643	219,997	1,888	240
57M220611	31.60	3,213,229	42,705	891,337	212,644	1,654	182
65A220611	48.09	3,259,571	48,211	915,187	222,548	1,676	184
Non redundant Total		8,161,894	647,131	1,729,238	526,177	3,292	494

¹Indels between 1–50 bp. ²Deletions >50 bp. ³Deletions that are not previously reported in the 1000 Genomes Project (both 2010 and 2012 releases).