Reads without gaps
| |
.1
|
20
|
28
|
17
|
27
|
17
|
27
|
.2
|
20
|
28
|
17
|
27
|
17
|
27
|
.3
|
20
|
28
|
17
|
27
|
17
|
27
|
Reads with gaps
| |
.1
|
20
|
28
|
17
|
27
|
17
|
27
|
.2
|
20
|
28
|
17
|
27
|
17
|
27
|
.3
|
20
|
28
|
17
|
27
|
17
|
27
|
(b) Time in minutes to map paired human reads from NA12878 in 1000 genomes (SRR016607) of length 101 bp to the human
|
genome. We denote NextGenMap by NGM and MaxSSmap by MSS. See Table 8 for more details about reads
|
NGM+
|
NGM+
|
NGM+
|
NGM+
|
NGM+
|
NGM+
| |
MSS_fast
|
MSSmap
|
MSS_fast
|
MSS
|
MSS_fast
|
MSS
| |
CUDA 4.2
| |
s
| |
OpenCL
| | |
1295.9
|
2242.4
|
1183.5
|
2092.7
|
1252.7
|
2159.9
| |
(c) Time in minutes to map 100,000 ancient horse DNA reads (SRR111892) of length 76 bp to
|
the horse genome Equus_caballus EquCab2 (GCA_000002305.1). See Table 9 for more details
|
about reads
|
NGM+
|
NGM+
|
NGM+
|
NGM+
|
NGM+
|
NGM+
| |
MSS_fast
|
MSSmap
|
MSS_fast
|
MSS
|
MSS_fast
|
MSS
| |
CUDA 4.2
| |
CUDA 6.0
| |
OpenCL
| | |
1609.6
|
2836
|
1515
|
2689.8
|
1561.8
|
2736.8
| |