From: Flexible and scalable genotyping-by-sequencing strategies for population studies
 | MlyI | AluI | RsaI | DraI | EcoRV | StuI | HaeIII | HincII |
---|---|---|---|---|---|---|---|---|
Recognition Motif | GAGTC(N)5/ | AG/CT | GT/AC | TTT/AAA | GAT/ATC | AGG/CCT | GG/CC | GTY/RAC |
 |  |  |  | Maize |  |  |  |  |
Reads (2 × 75bp) | 11,092,770 | 68,513,249 | 13,758,608 | 2,039,750 | 1,495,384 | 785,205 | 60,419,585 | 1,011,458 |
Fraction reads with correct motif | 0.389 | 0.995 | 0.969 | 0.957 | 0.882 | 0.904 | 0.996 | 0.851 |
 |  |  |  | Rice |  |  |  |  |
Reads (2 × 75bp) | 2,970,049 | 73,426,557 | 7,953,490 | 7,181,944 | 498,460 | 415,512 | 35,197,321 | 526,507 |
Fraction reads with correct motif | 0.375 | 0.995 | 0.994 | 0.996 | 0.946 | 0.971 | 0.998 | 0.890 |