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Table 7 Summary of unigene distribution in KEGG pathways that has significant differential expression of genes

From: Transcriptome profiling shows gene regulation patterns in a flavonoid pathway in response to exogenous phenylalanine in Boesenbergia rotunda cell culture

Category Sub-category Pathway DEGs with pathway annotation Up-regulated unigenes Down-regulated unigenes Q-value
Metabolism Carbohydrate Metabolism Citrate cycle (TCA cycle) 102 14 88 9.60E-05
Galactose metabolism 73 18 55 1.43E-02
Glycolysis/Gluconeogenesis 155 33 122 2.20E-02
Amino sugar and nucleotide sugar metabolism 151 56 95 3.04E-02
Pyruvate metabolism 134 18 116 3.04E-02
Glyoxylate and dicarboxylate metabolism 43 7 36 3.04E-02
Energy Metabolism Nitrogen metabolism 75 25 50 3.56E-03
Amino Acid Metabolism Phenylalanine metabolism 92 51 41 1.43E-02
Alanine, aspartate and glutamate metabolism 80 20 60 3.04E-02
Valine, leucine and isoleucine biosynthesis 45 7 38 4.21E-02
Metabolism of Terpenoid and Polyketides Terpenoid backbone biosynthesis 75 4 71 1.90E-06
Biosynthesis of Other Secondary Metabolites Phenylpropanoid biosynthesis 163 68 95 1.43E-02
Genetic Information Processing Translation Aminoacyl-tRNA biosynthesis 96 10 86 2.44E-03
Folding, Sorting and Degradation Protein processing in endoplasmic reticulum 241 53 188 1.43E-02
Environmental Information Processing Membrane Transport ABC transporters 116 17 99 1.22E-07
Cellular Processes Transport and Catabolism Endocytosis 208 44 164 9.54E-04
  1. Pathways in KEGG that has significant differential expression of genes was determined by Q value ≤ 0.05.