Evaluation of viral genome assembly and diversity estimation in deep metagenomes

BMC Genomics

Table 1 Sequencing and assembly statistics

	#reads	Read length	Read sum	#contigs	Contig sum	Contig mean	Contig max	N50
a ) High-coverage mock
454-CAMERA	0.2 M	700	140 M	2,515	8.8 M	3,526	279 K	10.7 K
454-CLC	0.2 M	700	120 M	2,798	7.6 M	2,737	103 K	4.55 K
GAIIx-CLC	26.5 M	2x150	7950 M	2,359	8.0 M	3,392	280 K	9.86 K
GAIIx-IDBA	26.5 M	2x150	7950 M	4,002	9.9 M	2,476	280 K	25.6 K
GAIIx-IDBA*	26.5 M	2x150	7950 M	4,040	9.8 M	2,447	280 K	20.6 K
b) Low-coverage mock
454- CAMERA	0.02 M	700	14 M	1,856	2.2 M	1,223	51 K	1.41 K
GAIIx-IDBA	2.65 M	2x150	795 M	3,406	10.1 M	2,973	280 K	32.3 K
GAIIx- IDBA*	2.65 M	2x150	795 M	3,476	10.1 M	2,912	280 K	27.7 K
Miseq-IDBA	1.65 M	2x300	990 M	3,859	9.9 M	2,565	280 K	27.0 K
Hiseq -IDBA	9.20 M	2x100	1840 M	2,674	9.5 M	3,568	280 K	32.3 K
c) Empirical
454- CAMERA	0.023 M	220	5.1 M	147	0.17 M	1,177	8 K	1.38 K
GAIIx-IDBA	1.98 M	2x75	297 M	2,774	4.55 M	1,643	114 K	1.98 K

ISSN: 1471-2164