Identification of conserved and polymorphic STRs for personal genomes

BMC Genomics

Table 1 Polymorphisms of CODIS STR markers for 7 different individuals.

CODIS marker	Repeat Pattern	Enbl.	NA12878 (CEU Child)	NA12891 (CEU Dad)	NA12892 (CEU Mom)	NA19238 (YRI Mom)	NA19239 (YRI Dad)	NA19240 (YRI Child)
ENSG00000182578 ( *CSF1PO* )	AGAT (Intron)	13.75	13.75	13.75	13.75	13.75	13.75	13.75
ENSG00000011376 ( *D3S1358* )	AGAT (Intron)	14.25	13.25	11.5	13.25	14.25	14.25	14.25
ENSG00000249816 ( *D8S1179* )	TATC (Intron)	13.75	13.75	13.75	13.5	13.75	13.5	13.75
ENSG00000180176 ( *TH01* )	AATG (Intron)	7.75	7.75	7.75	7.75	7.75	7.75	7.75
ENSG00000171560 ( *FGA* )	AAAG (Intron)	14.75	14.75	14.75	14.75	14.75	14.75	14.75
ENSG00000171791 ( *D18s51* )	GAAA (Intron)	15.5	15.5	15.5	15.5	15.25	15.25	15.25
ENSG00000115705 ( *TPOX* )	AATG (Intron)	8.5	8.5	8.5	8.5	8.5	8.5	8.5
ENSG00000110799 ( *vWA* )	ACAG (Intron)	5	3.75	4.75	3.75	5	5	4.75
	AGAT (Intron)	11.5	11.5	11.5	11.5	11.5	11.5	11.5
	TCCA (Intron)	12.5	12.5	12.5	12.5	10.25	11.5	10.25
ENSG00000075213 ( *D7s820* )	GATA (Intron)	10.75	10.75	10.75	10.75	10.75	12.25	10.75
ENSG00000168367 ( *D16s539* )	GATA (Intron)	11	11	11	11	11	11	11
*D5s818*	AGAT	11.75	11.75	11.75	11.75	11.75	11.75	11.75
*D13s317*	GATA	11	11	11	11	11	11	11
*D21s11*	TCTG	6.75	5.75	5.75	6.75	6.75	6.75	6.75

These genomes include the reference genome from Ensembl and 6 genomes (two families) from the 1000 Genomes Trio Project.
The first CEU family: NA12892, NA12891, and NA12878; the second YRI family: NA19238, NA19239, and NA19240. Enbl represents the genome from the Ensembl database; NA12878 represents the CEU daughter, NA12891 the CEU father, and NA12892 the CEU mother; NA19238 represents the YRI mother, NA19239 the YRI father, and NA19240 the YRI daughter. It should be noted that both STR markers of vWA were identified as 3 separate STRs in this table.

ISSN: 1471-2164