Skip to main content
Figure 5 | BMC Genomics

Figure 5

From: A memory-efficient algorithm to obtain splicing graphs and de novoexpression estimates from de Bruijn graphs of RNA-Seq data

Figure 5

Comparisons of the protein sequence BLAST results in the simulated transcriptome assemblies of Drosophila using its known complete genome over different values of k and k -mer coverage cutoff c (represented by k_c ) with varying percentages of mismatches in the reads. Sensitivity is defined to be the percentage of coding positions in the genome that are recovered in the assembly considering only Drosophila gene transcripts that are found in BLAST hits (each position that is within some coding region is counted once). Specificity is defined to be the percentage of predicted transcript positions in the assembly that are included in BLAST alignments considering only predictions that have BLAST hits.

Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us