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Table 1 Sensitivity and PPV comparison between methods on datasets simulated assuming uniform, respectively geometric expression of transcripts, with reads length 400 bp, mean fragment length 450 bp and 10% standard deviation.

From: Transcriptome assembly and quantification from Ion Torrent RNA-Seq data

Transcript expression Methods # assembled transcripts # confirmed annotated transcripts Sensitivity (%) PPV (%)
Uniform Cufflinks 18,582 12,909 51.06 69.47
  MaLTA 23,706 18,698 76.69 78.87
  IsoLasso 21,441 15,693 63.52 73.19
Geometric Cufflinks 17,377 12,449 50.21 71.64
  MaLTA 22,931 18,293 76.05 79.77
  IsoLasso 20,816 15,308 62.83 73.54